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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2035Homologs of previously reported genes of unknown function; 15326606. (437 aa)    
Predicted Functional Partners:
ygdQ
Membrane protein TerC; Function of strongly homologous gene; membrane component.
 
    0.829
ybeY
Conserved protein of unknown function, putative Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.573
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.529
msbA
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.497
rlpA-2
Putative lipoprotein, RlpA-like; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
   0.497
NIDE3405
Conserved exported protein of unknown function, contains PepSY domain; Homologs of previously reported genes of unknown function; 12589825, 15124630, 15583150, 7674922.
   
    0.457
NIDE3522
Conserved protein of unknown function, contains PepSY-associated TM helices; Homologs of previously reported genes of unknown function.
   
    0.457
msbA-3
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.450
msbA-2
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.449
NIDE2033
Conserved protein of unknown function, contains ATC domains; Homologs of previously reported genes of unknown function.
       0.404
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.