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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2061Conserved protein of unknown function, contains FMN-binding split barrel; Homologs of previously reported genes of unknown function; 12686112. (170 aa)    
Predicted Functional Partners:
NIDE1521
ABC-type transport system, periplasmic binding component; Function of strongly homologous gene; transporter.
 
    0.666
NIDE2674
Putative Vitamin B12 import system, periplasmic binding protein BtuF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.633
NIDE2062
Protein of unknown function; No homology to any previously reported sequences.
       0.572
NIDE2063
Homologs of previously reported genes of unknown function.
       0.572
NIDE2064
Homologs of previously reported genes of unknown function.
       0.540
NIDE2065
Homologs of previously reported genes of unknown function.
       0.523
NIDE2066
Protein of unknown function; No homology to any previously reported sequences.
       0.523
NIDE2059
Protein of unknown function; No homology to any previously reported sequences.
       0.465
NIDE2060
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.465
NIDE2672
Putative Vitamin B12 import system, ATP-binding protein BtuD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.446
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.