Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIDE2107TonB-dependent receptor, possible Cobalamin transporter; Function of strongly homologous gene; transporter. (684 aa)    
Predicted Functional Partners:
NIDE2007
Protein of unknown function; No homology to any previously reported sequences.
  
     0.675
NIDE0635
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.478
NIDE2008
Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
    
 
 0.457
NIDE0648
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.454
NIDE1252
Homologs of previously reported genes of unknown function.
  
     0.449
NIDE3512
Putative di-haem Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.447
NIDE3612
Homologs of previously reported genes of unknown function.
  
     0.437
NIDE4349
Homologs of previously reported genes of unknown function.
  
     0.437
NIDE2106
Putative High-affinity nickel/cobalt transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.430
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
  
 0.413
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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