close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2108Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 10786835, 14659697, 7667876, 9482716. (338 aa)    
Predicted Functional Partners:
NIDE0948
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.
 
   0.787
NIDE3274
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 16893176, 7667876, 9482716.
  
 
   0.767
NIDE3352
Putative Type IV pilus biogenesis/stability protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.749
tadC
Pilus assembly protein TadC; Function of strongly homologous gene; transporter.
 
  
 0.726
NIDE2405
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15361863, 16893176, 7667876, 9482716.
 
 
 
 0.721
tadB
Pilus assembly protein TadB; Function of strongly homologous gene; transporter.
 
  
 0.706
NIDE3673
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15451670, 1882418, 7667876, 9482716.
  
   0.694
NIDE2116
Putative Pilus assembly protein CpaC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure; Belongs to the bacterial secretin family.
 
  
 0.677
NIDE2114
Conserved protein of unknown function, TadE-like; Homologs of previously reported genes of unknown function.
 
  
 0.663
cpaB
Pilus assembly protein CpaB (modular protein); Function of strongly homologous gene; structure.
 
  
 0.634
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.