Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2121Putative Transposase insN for insertion sequence element IS911; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (99 aa)    
Predicted Functional Partners:
NIDE2122
Transposase of IS3/IS150/IS904 family; Function of strongly homologous gene; extrachromosomal origin.
 
     0.877
NIDE2843
Putative Transposase insO for insertion sequence element IS911A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
     0.775
NIDE2014
Putative Transposase InsF for insertion sequence IS3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.482
NIDE1782
Putative Transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.466
NIDE2119
Putative Histidine kinase with protein phosphatase region; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.434
NIDE2120
Anti-sigma factor antagonist; Function of strongly homologous gene; regulator.
       0.434
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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