STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2135Putative Transposase related protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (54 aa)    
Predicted Functional Partners:
NIDE2136
Putative Transposase related protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
       0.773
NIDE3222
Putative Deacetylase, histone deacetylase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.749
NIDE3177
Protein of unknown function, contains DnaJ domain; No homology to any previously reported sequences; 12454054, 15170475, 8016869, 9644977.
    
 0.732
NIDE1523
Protein of unknown function; No homology to any previously reported sequences; 14731533, 15335710, 1639195, 7531822, 7953536.
    
 
 0.707
NIDE3282
Exported protein of unknown function, contains WD40 repeats; No homology to any previously reported sequences; 1909108.
    
 
 0.707
NIDE2137
Transposase, IS111A/IS1328/IS1533 family (modular protein); Function of strongly homologous gene; extrachromosomal origin.
       0.568
NIDE2138
Putative Transposase for insertion sequence element IS21; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
       0.568
istB3
Insertion sequence IS21 putative ATP-binding protein; Function of strongly homologous gene; extrachromosomal origin.
       0.568
NIDE2134
Transposase, IS3/IS911 family; Function of strongly homologous gene; extrachromosomal origin.
       0.560
NIDE2133
Transposase; Function of strongly homologous gene; extrachromosomal origin.
       0.492
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.