STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2196Protein of unknown function, DUF362; No homology to any previously reported sequences. (356 aa)    
Predicted Functional Partners:
NIDE2195
Putative Thiosulfate sulfurtransferase glpE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
NIDE2194
Conserved protein of unknown function, radical SAM superfamily; Homologs of previously reported genes of unknown function; 14633981, 14704425.
       0.643
NIDE0534
Conserved protein of unknown function, UPF0272; Homologs of previously reported genes of unknown function; Belongs to the LarC family.
 
     0.592
NIDE3731
Conserved protein of unknown function, PP-loop superfamily; Homologs of previously reported genes of unknown function; 7731953.
 
     0.586
NIDE0532
Conserved protein of unknown function, putative NCAIR mutase; Homologs of previously reported genes of unknown function; 10574791.
 
     0.541
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.464
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.