Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2212Homologs of previously reported genes of unknown function. (1158 aa)    
Predicted Functional Partners:
NIDE4200
Homologs of previously reported genes of unknown function.
  
    0.590
otsB
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.573
NIDE0551
Conserved protein of unknown function, Tetratricopeptide repeat protein; Homologs of previously reported genes of unknown function; 14659697, 1882418, 7667876, 9482716.
  
     0.548
NIDE2030
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.
  
     0.539
NIDE1955
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.
  
     0.507
NIDE3096
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.
  
     0.484
NIDE2029
Haemagg_act domain-containing protein; No homology to any previously reported sequences; 10835344, 11703654, 15079085, 16339899, 7519681.
  
     0.480
NIDE1946
Protein of unknown function, putative exoprotein of filamentous haemagglutinin family; No homology to any previously reported sequences; 16339899, 2539596, 7519681, 9724625.
  
     0.478
NIDE2226
Protein of unknown function; No homology to any previously reported sequences.
  
     0.477
NIDE2227
Protein of unknown function; No homology to any previously reported sequences.
  
     0.475
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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