STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2246Homologs of previously reported genes of unknown function. (296 aa)    
Predicted Functional Partners:
dnaE
DNA polymerase III, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.789
NIDE2248
Putative DNA polymerase IV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.789
NIDE2249
Putative Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response).
       0.698
NIDE0577
Homologs of previously reported genes of unknown function.
 
     0.480
NIDE1902
RNA polymerase sigma factor, sigma-70 family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.466
NIDE2245
Membrane protein of unknown function, putative 4Fe-4S ferredoxin; No homology to any previously reported sequences; 2600971, 3932661.
       0.413
NIDE2250
Protein of unknown function; No homology to any previously reported sequences.
       0.406
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.