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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yifBPutative ATP-dependent protease, Mg chelatase-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (509 aa)    
Predicted Functional Partners:
smf
Protein SMF, putative DNA protecting protein DprA; Function of strongly homologous gene; phenotype.
 
 0.918
NIDE2261
Exported protein of unknown function; No homology to any previously reported sequences.
       0.821
NIDE1089
Putative Phosphoribosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.806
NIDE3068
Conserved protein of unknown function, UPF0102; Homologs of previously reported genes of unknown function; Belongs to the UPF0102 family.
 
  
 0.801
NIDE2262
Protein of unknown function; No homology to any previously reported sequences.
       0.655
NIDE2734
Putative Competence protein ComEC/Rec2 related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.648
NIDE2259
Protein of unknown function; No homology to any previously reported sequences.
       0.467
NIDE2726
Protein of unknown function, contains DNA-binding helix-hairpin-helix region; No homology to any previously reported sequences; 7664751, 8692686, 9973609, 9987128.
  
  
 0.421
NIDE0805
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.408
NIDE0815
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.