Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE2293Homologs of previously reported genes of unknown function. (212 aa)    
Predicted Functional Partners:
NIDE2290
Two-component system, NtrC family, nitrogen regulation response regulator NtrX; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.990
fliG
Flagellar motor switch protein FliG; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
    0.980
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.978
fliI
ATPase FliI; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.969
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
  
  
 0.967
fliE
Flagellar hook-basal body complex protein FliE; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
  
 0.947
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
  
 0.932
flgE
Flagellar hook protein FlgE; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
  
 0.928
motA
Flagellar motor protein MotA; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
  
 0.928
fliQ
Flagellar biosynthetic protein FliQ, export component; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
  
  
 0.923
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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