Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fleNFlagellar number regulator FleN; Function of homologous gene experimentally demonstrated in an other organism; regulator. (288 aa)    
Predicted Functional Partners:
NIDE2307
Putative Flagellar biosynthetic protein FlhF, GTP binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
 0.994
fliM
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
 
  
 0.924
fliA
Flagellar-specific RNA polymerase sigma 28 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.914
flhA
Flagellar biosynthetic protein FlhA, export component; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.903
fliG
Flagellar motor switch protein FliG; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
  
 0.838
flhB
Flagellar biosynthetic protein FlhB, export component; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
  
 
 0.828
fliR
Flagellar biosynthetic protein FliR, export component; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
  
  
 0.807
fliN
Flagellar motor switch protein FliN; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
  
 0.785
fliQ
Flagellar biosynthetic protein FliQ, export component; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
  
  
 0.782
tadB
Pilus assembly protein TadB; Function of strongly homologous gene; transporter.
     
 0.780
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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