Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2373Homologs of previously reported genes of unknown function. (74 aa)    
Predicted Functional Partners:
NIDE2374
Conserved protein of unknown function, YcfA-like; Homologs of previously reported genes of unknown function.
 
 
 
 0.986
NIDE2935
Homologs of previously reported genes of unknown function.
 
 
 
 0.803
NIDE1554
Conserved protein of unknown function, UPF0150; Homologs of previously reported genes of unknown function.
  
     0.670
NIDE2369
Putative Anti-sigma factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the anti-sigma-factor antagonist family.
 
     0.521
NIDE2627
Homologs of previously reported genes of unknown function.
  
     0.507
NIDE2500
Homologs of previously reported genes of unknown function.
  
   
 0.477
NIDE2375
Exported protein of unknown function; No homology to any previously reported sequences.
       0.476
NIDE2370
Putative Response regulator receiver modulated Serine phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.468
NIDE2371
Putative Phosphorelay protein, contains HPt domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.468
NIDE2372
Putative Response regulator with ATPase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.468
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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