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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2374Conserved protein of unknown function, YcfA-like; Homologs of previously reported genes of unknown function. (73 aa)    
Predicted Functional Partners:
NIDE2373
Homologs of previously reported genes of unknown function.
 
 
 
 0.990
NIDE1554
Conserved protein of unknown function, UPF0150; Homologs of previously reported genes of unknown function.
 
 
 
 0.954
NIDE2936
Homologs of previously reported genes of unknown function.
 
 
 
 0.878
NIDE2001
Homologs of previously reported genes of unknown function.
   
 
 0.825
NIDE2500
Homologs of previously reported genes of unknown function.
  
   
 0.671
NIDE2380
Homologs of previously reported genes of unknown function.
 
     0.510
NIDE1071
Homologs of previously reported genes of unknown function.
  
     0.508
NIDE2880
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
  
     0.478
NIDE2375
Exported protein of unknown function; No homology to any previously reported sequences.
       0.476
NIDE2370
Putative Response regulator receiver modulated Serine phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.468
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.