Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2380Homologs of previously reported genes of unknown function. (88 aa)    
Predicted Functional Partners:
NIDE2379
Homologs of previously reported genes of unknown function.
 
 
 0.991
NIDE2381
Homologs of previously reported genes of unknown function.
       0.548
NIDE2374
Conserved protein of unknown function, YcfA-like; Homologs of previously reported genes of unknown function.
 
     0.510
NIDE1071
Homologs of previously reported genes of unknown function.
  
     0.494
NIDE2378
Homologs of previously reported genes of unknown function.
       0.400
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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