STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yoeBAddiction module toxin YoeB; Function of homologous gene experimentally demonstrated in an other organism; factor. (84 aa)    
Predicted Functional Partners:
yefM-2
Addiction module antitoxin yefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.994
yefM
Antitoxin of toxin-antitoxin stability system; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.904
stbE
Addiction module toxin; Function of strongly homologous gene; cell process.
      
 0.810
higB
Toxin of plasmid maintenance system; Function of strongly homologous gene; extrachromosomal origin.
      
 0.809
mazF
Toxin MazF; Toxic component of a type II toxin-antitoxin (TA) system.
      
 0.776
NIDE0133
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.627
NIDE2004
Addiction module antitoxin, Axe/YefM family; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.627
NIDE3688
Putative Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.627
phd
Antitoxin of toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.627
NIDE2384
Protein of unknown function; No homology to any previously reported sequences.
       0.433
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.