Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2386Conserved protein of unknown function, Heparinase II/III family; Homologs of previously reported genes of unknown function; 8108379, 8702264. (604 aa)    
Predicted Functional Partners:
NIDE2410
Putative Oxidoreductase, alcohol dehydrogenase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.827
NIDE2400
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
 
     0.631
wecB
UDP-N-acetylglucosamine 2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
     0.563
NIDE2408
Putative Lipopolysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.508
NIDE2681
Conserved protein of unknown function, putative Polysaccharide export protein; Homologs of previously reported genes of unknown function.
 
     0.475
NIDE2680
Protein of unknown function, putative Polysaccharide export protein; No homology to any previously reported sequences.
 
     0.463
NIDE2403
Homologs of previously reported genes of unknown function.
 
     0.454
NIDE2404
UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.447
NIDE2384
Protein of unknown function; No homology to any previously reported sequences.
       0.400
NIDE2399
Conserved protein of unknown function, Heparinase II/III-like; Homologs of previously reported genes of unknown function.
 
    
0.400
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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