Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2482Dioxygenase, ferredoxin subunit; Function of strongly homologous gene; carrier. (101 aa)    
Predicted Functional Partners:
typA
GTP-binding protein TypA; Function of homologous gene experimentally demonstrated in an other organism; factor.
      
 0.795
mrp-2
Protein Mrp, putative ATPase (fragment); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.719
cobA/hemD
Uroporphyrinogen-III C-methyltransferase and Uroporphyrinogen-III synthase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the precorrin methyltransferase family.
  
  
 0.697
hemD
Porphyrin biosynthesis protein HemD; Function of strongly homologous gene; enzyme.
  
  
 0.697
NIDE2484
Protein of unknown function; No homology to any previously reported sequences.
       0.607
NIDE2483
Protein of unknown function; No homology to any previously reported sequences.
       0.581
nxrB1
Putative Nitrate oxidoreductase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.555
nxrB2
Putative Nitrate oxidoreductase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.555
narK
Nitrate transporter; Function of strongly homologous gene; transporter.
 
  
 0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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