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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2490Homologs of previously reported genes of unknown function. (216 aa)    
Predicted Functional Partners:
NIDE2489
Homologs of previously reported genes of unknown function.
 
     0.959
NIDE2488
Homologs of previously reported genes of unknown function; 8747466, 8950276.
 
     0.957
NIDE2491
Homologs of previously reported genes of unknown function.
 
     0.908
NIDE2492
Homologs of previously reported genes of unknown function.
 
     0.908
NIDE2487
Homologs of previously reported genes of unknown function.
 
     0.899
NIDE2486
Homologs of previously reported genes of unknown function.
       0.522
NIDE1088
Putative Regulatory protein, FmdB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.407
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.