Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2490Homologs of previously reported genes of unknown function. (216 aa)    
Predicted Functional Partners:
NIDE2489
Homologs of previously reported genes of unknown function.
 
     0.958
NIDE2488
Homologs of previously reported genes of unknown function; 8747466, 8950276.
 
     0.957
NIDE2491
Homologs of previously reported genes of unknown function.
 
     0.909
NIDE2492
Homologs of previously reported genes of unknown function.
 
     0.909
NIDE2487
Homologs of previously reported genes of unknown function.
 
     0.896
NIDE2486
Homologs of previously reported genes of unknown function.
       0.515
NIDE1088
Putative Regulatory protein, FmdB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.407
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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