STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2506Putative Type I restriction-modification system, site-specific deoxyribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (977 aa)    
Predicted Functional Partners:
NIDE2502
Putative Type I restriction-modification system, N-6 adenine-specific DNA methylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.978
NIDE2503
Putative Type I restriction-modification system, specificity protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.978
NIDE1898
Putative Type I restriction system, N-6 adenine-specific DNA methylase HsdM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.909
NIDE1900
Putative Type I restriction system, specificity protein HsdS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.907
radC
DNA repair protein RadC homolog; Function of strongly homologous gene; factor; Belongs to the UPF0758 family.
       0.782
NIDE2505
Putative Transcriptional regulator (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.781
NIDE2504
Homologs of previously reported genes of unknown function.
       0.773
hsdM
Type I restriction endonuclease, M subunit (modular protein); Function of strongly homologous gene; enzyme.
 
  
 0.732
NIDE2623
Conserved protein of unknown function, RhuM family; Homologs of previously reported genes of unknown function; 9922266.
  
    0.707
NIDE2624
Putative Type I restriction-modification system, specificity subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.705
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.