Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2525Conserved protein of unknown function, contains HDIG domain; Homologs of previously reported genes of unknown function; 7845226. (296 aa)    
Predicted Functional Partners:
sthA-2
Soluble pyridine nucleotide transhydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.841
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.633
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.572
NIDE2526
Homologs of previously reported genes of unknown function.
       0.550
fleN
Flagellar number regulator FleN; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.549
NIDE2523
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.
       0.528
NIDE1085
Putative Metal dependent phosphohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   0.520
flgD
Flagellar hook capping protein FlgD (fragment); Function of homologous gene experimentally demonstrated in an other organism; structure.
 
    0.504
fliM
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
 
    0.502
motA
Flagellar motor protein MotA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
     0.495
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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