STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2575Putative Outer membrane protein, ompA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (301 aa)    
Predicted Functional Partners:
NIDE2576
Exported protein of unknown function; No homology to any previously reported sequences; 9463374.
       0.814
motB
Flagellar motor protein MotB; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
 
 0.710
NIDE0942
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences.
  
     0.644
NIDE2439
Putative Peptidoglycan-associated lipoprotein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.622
flgE
Flagellar hook protein FlgE; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
 
 0.483
tolQ
Protein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.455
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
   
   0.444
NIDE0237
Exported protein of unknown function; No homology to any previously reported sequences; 16475801, 2202726.
  
 
0.400
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.