STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2604Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein. (239 aa)    
Predicted Functional Partners:
NIDE2605
Conserved protein of unknown function, putative Pyrophosphohydrolase; Homologs of previously reported genes of unknown function; 12657645.
       0.671
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
     0.622
NIDE2010
Homologs of previously reported genes of unknown function; 11777911, 15066636, 15223324, 8266097.
  
     0.592
NIDE4095
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.518
NIDE2606
Protein of unknown function; No homology to any previously reported sequences.
       0.499
NIDE1761
Homologs of previously reported genes of unknown function; 11761326, 12686102, 12686116.
 
     0.495
NIDE1873
Conserved exported protein of unknown function, DUF748; Homologs of previously reported genes of unknown function.
  
     0.487
NIDE2008
Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.465
NIDE0131
Homologs of previously reported genes of unknown function; 8440408, 9759493.
  
     0.462
NIDE3397
Exported protein of unknown function, contains Fibronectin type III domain; No homology to any previously reported sequences; 7528812, 9990027.
  
     0.425
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.