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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome bd oxidase, subunit I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the cytochrome ubiquinol oxidase subunit 1 family. (447 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd oxidase, subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
rpoH
RNA polymerase, sigma 32 (sigma H) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
      
 0.693
nuoM2
NADH-quinone oxidoreductase, membrane subunit M; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.673
nuoM1
NADH-quinone oxidoreductase, membrane subunit M; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.673
nuoM
NADH-quinone oxidoreductase, membrane subunit M; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.673
nuoH
NADH-quinone oxidoreductase, membrane subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
     
 0.673
nuoF-2
NADH-quinone oxidoreductase, subunit F; Function of homologous gene experimentally demonstrated in an other organism; carrier.
     
 0.673
rpoE
RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.654
degP
Serine protease Do; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.604
degP-2
Protease Do; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.604
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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