STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome bd oxidase, subunit I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the cytochrome ubiquinol oxidase subunit 1 family. (447 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd oxidase, subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
NIDE0896
Uncharacterized protein; No homology to any previously reported sequences.
     
  0.900
NIDE0901
Membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1; No homology to any previously reported sequences; 2843510.
     
  0.900
NIDE3296
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
     
  0.900
NIDE3303
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
     
  0.900
hscA
Chaperone protein HscA (Hsc66); Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the heat shock protein 70 family.
      
 0.651
rpoH
RNA polymerase, sigma 32 (sigma H) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
      
 0.627
rpoE
RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.627
degP
Serine protease Do; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.622
degP-2
Protease Do; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.622
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.