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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2640Protein of unknown function, TPR-like; No homology to any previously reported sequences; 15189147, 1882418, 7667876, 7748903, 8690703, 9482716. (639 aa)    
Predicted Functional Partners:
NIDE1096
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function; 14659697, 1882418, 7667876, 9482716.
 
     0.644
NIDE3309
Exported protein of unknown function, contains HEAT-like repeats; No homology to any previously reported sequences; 7550332, 8132596, 9882677.
  
     0.621
NIDE4147
Conserved protein of unknown function, Bilin biosynthesis protein-like; Homologs of previously reported genes of unknown function; 16819590, 7550332, 8132596, 8855320, 902317, 9023176, 9882677.
  
     0.571
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
  
   
 0.569
NIDE4150
Conserved protein of unknown function, contains HEAT-like repeats; Homologs of previously reported genes of unknown function; 8132596, 9023176, 9882677.
  
     0.556
NIDE1288
Protein of unknown function, contains HEAT-like repeats; No homology to any previously reported sequences; 7550332, 8132596, 9882677.
  
     0.553
cspA
Cold shock protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor.
       0.550
NIDE4149
Conserved protein of unknown function, Bilin biosynthesis protein-like; Homologs of previously reported genes of unknown function; 16819590, 8132596, 9023176, 9882677.
  
     0.539
NIDE2465
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.
  
     0.534
NIDE0256
Protein of unknown function, HEAT repeat protein; No homology to any previously reported sequences.
  
     0.521
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.