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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2642Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (361 aa)    
Predicted Functional Partners:
NIDE2643
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
0.997
lptB
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter.
 
 
 0.993
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.746
pilT1
Twitching mobility protein PilT; Function of homologous gene experimentally demonstrated in an other organism; structure.
     
 0.732
copA
Copper-exporting ATPase; Function of strongly homologous gene; transporter.
      
 0.716
ybhF
ABC transport system, fused ATPase components; Function of strongly homologous gene; enzyme.
   
  
 0.700
drrA
Daunorubicin resistance ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
   
  
 0.700
NIDE1279
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
   
  
 0.700
NIDE3338
ABC-type transport system, ATP-binding component; Function of strongly homologous gene; transporter.
   
  
 0.700
NIDE3435
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
   
  
 0.700
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.