STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2685Putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DegT/DnrJ/EryC1 family. (372 aa)    
Predicted Functional Partners:
NIDE2986
Putative Undecaprenyl-phosphate glucose phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.808
capD2
Polysaccharide biosynthesis protein CapD; Function of strongly homologous gene; enzyme.
  
 0.791
NIDE2684
Protein of unknown function DUF218; No homology to any previously reported sequences.
       0.778
NIDE3413
Conserved protein of unknown function, NAD-binding; Homologs of previously reported genes of unknown function.
 
  
 0.615
capD
Polysaccharide biosynthesis protein CapD; Function of strongly homologous gene; enzyme.
  
 0.610
NIDE2334
Protein of unknown function, putative Glycosyl transferase; No homology to any previously reported sequences; 9334165.
  
  
 0.556
NIDE2682
Putative Polysaccharide export protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.524
NIDE3038
Putative Oxidoreductase, Gfo/Idh/MocA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.508
NIDE3586
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.494
rfbA
Glucose-1-phosphate thymidylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.458
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.