Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2689Conserved protein of unknown function, putative Hexapeptide repeat transferase; Homologs of previously reported genes of unknown function; 7481807, 8293817. (235 aa)    
Predicted Functional Partners:
NIDE2694
Exopolysaccharide production protein; Function of strongly homologous gene; enzyme.
  
 0.959
cysK
Cysteine synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.783
cysS
Cysteinyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.751
NIDE2690
Protein of unknown function, putative Methyltransferase; No homology to any previously reported sequences.
       0.732
NIDE2691
Putative D-alanine-poly(phosphoribitol) ligase, subunit 2 (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.711
NIDE2692
Putative D-alanine-poly(phosphoribitol) ligase, subunit 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.711
NIDE2688
Homologs of previously reported genes of unknown function.
 
    0.673
nadA
Quinolinate synthetase, subunit A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
  
    0.668
wecB-2
UDP-N-acetylglucosamine 2-epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.631
capD2
Polysaccharide biosynthesis protein CapD; Function of strongly homologous gene; enzyme.
 
  
 0.604
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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