Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2823Protein of unknown function, putative Fimbrial assembly family; No homology to any previously reported sequences. (208 aa)    
Predicted Functional Partners:
NIDE2824
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.962
gspE
General secretion pathway protein E; Function of strongly homologous gene; transporter.
  
 
 0.871
NIDE1350
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
 
 0.837
NIDE1352
Putative Type IV pili biogenesis protein PilQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
 
 0.821
NIDE2822
Homologs of previously reported genes of unknown function.
       0.817
NIDE2820
Homologs of previously reported genes of unknown function.
  
  
 0.816
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
  
 
 0.814
NIDE2821
Exported protein of unknown function; No homology to any previously reported sequences.
       0.804
NIDE1351
Putative Type IV pilus assembly protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.775
gspF
General secretion pathway protein F; Function of strongly homologous gene; transporter.
   
 
 0.751
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.