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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2830Putative General secretion pathway protein D; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (765 aa)    
Predicted Functional Partners:
gspG2
General secretion pathway protein G; Function of strongly homologous gene; membrane component.
   
 0.967
gspG3
General secretion pathway protein G; Function of strongly homologous gene; membrane component.
 
  
 0.964
NIDE2820
Homologs of previously reported genes of unknown function.
 
  
 0.905
gspF
General secretion pathway protein F; Function of strongly homologous gene; transporter.
 
  
 0.884
gspE
General secretion pathway protein E; Function of strongly homologous gene; transporter.
 
  
 0.865
NIDE2024
Protein of unknown function, contains FHA and Transglycosylase SLT domain; No homology to any previously reported sequences; 10518219, 10843862, 11106755, 11911881, 12564991, 14625683, 7482699, 8203016.
  
  
 0.851
NIDE2827
Protein of unknown function; No homology to any previously reported sequences.
       0.812
NIDE1528
Conserved protein of unknown function, contains FHA domain; Homologs of previously reported genes of unknown function; 11106755, 11911881, 12564991, 7482699.
 
  
 0.797
NIDE2823
Protein of unknown function, putative Fimbrial assembly family; No homology to any previously reported sequences.
     
 0.721
NIDE2824
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.721
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.