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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2861Putative Polysaccharide deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (315 aa)    
Predicted Functional Partners:
NIDE2864
Glycosyl transferase, group 2; Function of strongly homologous gene; enzyme.
 
  
 0.886
NIDE2860
Homologs of previously reported genes of unknown function.
 
     0.800
NIDE2856
Putative O-antigen polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.662
NIDE2866
Homologs of previously reported genes of unknown function; 1644165, 8090199.
 
     0.609
NIDE0883
Putative Succinoglycan biosynthesis protein ExoA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.598
NIDE2854
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
    0.549
wzb
Low molecular weight protein-tyrosine-phosphatase Wzb; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.503
NIDE2862
Homologs of previously reported genes of unknown function.
       0.491
NIDE3810
Conserved protein of unknown function, contains Ankyrin repeats; Homologs of previously reported genes of unknown function; 8108379.
 
     0.490
NIDE2867
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.477
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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