Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE2864Glycosyl transferase, group 2; Function of strongly homologous gene; enzyme. (379 aa)    
Predicted Functional Partners:
parA
Chromosomal partitioning ATPase ParA; Function of strongly homologous gene; enzyme.
  
 
 0.811
NIDE2861
Putative Polysaccharide deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.762
NIDE2866
Homologs of previously reported genes of unknown function; 1644165, 8090199.
 
   
 0.757
NIDE2856
Putative O-antigen polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.736
NIDE2860
Homologs of previously reported genes of unknown function.
 
     0.722
NIDE2865
Putative Aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.654
NIDE2895
Putative Undecaprenyl-phosphate galactose phosphotransferase RfbP (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.650
exoY
Exopolysaccharide production protein ExoY; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.618
NIDE2867
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.596
NIDE2863
Homologs of previously reported genes of unknown function.
       0.592
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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