Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE2885Homologs of previously reported genes of unknown function. (420 aa)    
Predicted Functional Partners:
NIDE2886
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
   0.889
NIDE3006
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.743
NIDE2692
Putative D-alanine-poly(phosphoribitol) ligase, subunit 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
      0.671
NIDE2884
Homologs of previously reported genes of unknown function.
       0.570
NIDE2883
Putative dTDP-glucose 4,6-dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.559
flaG
Flagellar protein FlaG; Function of strongly homologous gene; structure.
  
   0.552
flgM
Anti-sigma 28 factor FlgM; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
    0.497
NIDE2211
Putative Nucleotidyl transferase, possible Glucose-1-phosphate thymidylyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.487
fliM
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
    
   0.470
flgK
First flagellar hook-filament junction protein FlgK; Function of homologous gene experimentally demonstrated in an other organism; structure.
    
   0.470
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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