STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBO-antigen export system, ATP-binding protein RfbB (modular protein); Function of strongly homologous gene; transporter. (423 aa)    
Predicted Functional Partners:
NIDE2892
Putative O-antigen export system, permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.998
NIDE0507
ABC-2 type transporter, permease component, putative LPS export system; Function of strongly homologous gene; transporter.
 
 0.992
wzm
ABC-type polysaccharide transport system, permease component; Function of strongly homologous gene; transporter.
 
 0.992
NIDE2334
Protein of unknown function, putative Glycosyl transferase; No homology to any previously reported sequences; 9334165.
 
 
 0.774
NIDE0890
Putative Lipopolysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.737
NIDE3430
Putative Methyltransferase and glycosyltransferase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.565
NIDE2898
Putative Polysaccharide export protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.555
NIDE2899
Putative Polysaccharide export protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.539
NIDE1089
Putative Phosphoribosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
    0.529
NIDE2893
Protein of unknown function; No homology to any previously reported sequences.
       0.447
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.