STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2908Homologs of previously reported genes of unknown function. (118 aa)    
Predicted Functional Partners:
recO
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.726
NIDE2907
Exported protein of unknown function; No homology to any previously reported sequences.
       0.712
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.609
mgtE
Magnesium transporter MgtE; Acts as a magnesium transporter.
       0.584
mrp-2
Protein Mrp, putative ATPase (fragment); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     0.534
era
GTP-binding protein Era homolog; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.476
NIDE0677
Putative Disulfide oxidoreductase dsbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.467
ftsB
Cell division protein FtsB homolog; Function of homologous gene experimentally demonstrated in an other organism; cell process.
       0.466
NIDE3775
Putative Cytochrome c552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.441
NIDE3308
Homologs of previously reported genes of unknown function.
  
     0.434
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.