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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2935Homologs of previously reported genes of unknown function. (80 aa)    
Predicted Functional Partners:
NIDE2936
Homologs of previously reported genes of unknown function.
 
 
 
 0.990
NIDE2373
Homologs of previously reported genes of unknown function.
 
 
 
 0.864
NIDE1554
Conserved protein of unknown function, UPF0150; Homologs of previously reported genes of unknown function.
 
 
 
 0.863
NIDE2001
Homologs of previously reported genes of unknown function.
   
 
 0.825
NIDE2934
Putative Undecaprenyl-diphosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
NIDE2937
Homologs of previously reported genes of unknown function.
       0.448
NIDE1071
Homologs of previously reported genes of unknown function.
  
     0.413
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.