Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2940Homologs of previously reported genes of unknown function. (598 aa)    
Predicted Functional Partners:
NIDE2282
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.
  
 
 0.928
NIDE0867
Putative Surface antigen D15; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
 
 0.818
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.818
NIDE2941
Homologs of previously reported genes of unknown function.
       0.773
NIDE0853
Protein of unknown function, TPR-like; No homology to any previously reported sequences.
   
 
 0.747
NIDE3446
Homologs of previously reported genes of unknown function.
   
 
 0.747
fkpA
Peptidylprolyl isomerase, FKBP-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.642
NIDE1955
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.
  
    0.599
fbp
Peptidyl-prolyl cis-trans isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.584
NIDE3206
Exported protein of unknown function, putative Tyrosinase; No homology to any previously reported sequences; 1901488, 8939424, 9846879.
  
     0.584
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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