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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neuAN-acylneuraminate cytidylyltransferase; Function of strongly homologous gene; enzyme. (230 aa)    
Predicted Functional Partners:
NIDE2999
Putative N-acetylneuraminate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.996
wecB-2
UDP-N-acetylglucosamine 2-epimerase; Function of strongly homologous gene; enzyme.
  
 0.983
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   0.964
NIDE2996
Homologs of previously reported genes of unknown function.
 
  
 0.914
NIDE3001
Protein of unknown function; No homology to any previously reported sequences.
       0.773
NIDE2997
Putative UDP-glucose 4-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.768
NIDE3003
Protein of unknown function, putative O-methyltransferase; No homology to any previously reported sequences.
       0.737
NIDE3002
Protein of unknown function; No homology to any previously reported sequences.
       0.727
NIDE2994
Putative Exopolysaccharide production protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.610
NIDE3004
Protein of unknown function, putative Glycosyltransferase; No homology to any previously reported sequences.
  
    0.582
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.