STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3009Conserved protein of unknown function, Heparinase II/III family; Homologs of previously reported genes of unknown function; 8108379, 8702264. (703 aa)    
Predicted Functional Partners:
NIDE2410
Putative Oxidoreductase, alcohol dehydrogenase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.807
NIDE3007
Membrane protein of unknown function, putative polysaccharide biosynthesis protein; No homology to any previously reported sequences; 8226646.
       0.705
cysC
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
       0.689
wecB
UDP-N-acetylglucosamine 2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
     0.610
NIDE2400
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
  
     0.590
asnB4
Asparagine synthase (glutamine-hydrolyzing); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     0.532
NIDE3006
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.498
wecB-2
UDP-N-acetylglucosamine 2-epimerase; Function of strongly homologous gene; enzyme.
 
     0.431
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.