Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE3021Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (338 aa)    
Predicted Functional Partners:
NIDE3025
Putative Mannosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.636
NIDE1826
Putative 2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinol hydroxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.623
NIDE3023
Putative Lipopolysaccharide heptosyltransferase III; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.590
NIDE3022
Putative Glycosyl transferase, family 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.580
NIDE3024
Protein of unknown function; No homology to any previously reported sequences.
       0.580
NIDE3495
Homologs of previously reported genes of unknown function.
    
 0.580
rfaF/gmhB
Heptosyltransferase II; Function of strongly homologous gene; enzyme.
  
 
 0.531
NIDE3026
Putative Lipopolysaccharide core biosynthesis glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.473
waaE
Lipopolysaccharide core biosynthesis glycosyltransferase; Function of strongly homologous gene; enzyme.
       0.473
NIDE3030
Putative Lipopolysaccharide heptosyltransferase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.403
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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