Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3053Conserved protein of unknown function, Peptidase M23B family; Homologs of previously reported genes of unknown function. (328 aa)    
Predicted Functional Partners:
NIDE3065
Putative Murein hydrolase EnvC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
   
 0.801
NIDE3054
Conserved protein of unknown function, putative Proteasome component; Homologs of previously reported genes of unknown function; 17277063, 7583123, 9765579.
  
    0.740
mrcA
Penicillin-binding protein 1A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   
 0.542
psmA
Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.539
psmB
Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.539
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
   
 0.484
NIDE3057
Conserved protein of unknown function, putative Proteasome component; Homologs of previously reported genes of unknown function; 17277063, 7583123, 9765579.
  
    0.470
pan
Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.
       0.463
NIDE3591
Putative Penicillin-binding protein 1B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.460
NIDE2972
Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.444
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.