STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycbKConserved exported protein of unknown function, DUF882; Homologs of previously reported genes of unknown function; 15802249, 16322447, 16756481, 9841666. (196 aa)    
Predicted Functional Partners:
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase; Function of strongly homologous gene; enzyme.
       0.478
NIDE0052
Metallo-beta-lactamase superfamily hydrolase; Function of strongly homologous gene; enzyme.
  
    0.459
NIDE3119
Conserved protein of unknown function, Beta-lactamase-like; Homologs of previously reported genes of unknown function; 11916693.
  
    0.459
NIDE3370
Putative Hydrolase, beta-lactamase-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.459
NIDE4281
Putative Hydrolase with N-terminal DNA-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.459
NIDE1401
Homologs of previously reported genes of unknown function.
  
    0.439
NIDE3088
Sigma-54 dependent transcriptional regulator; Function of strongly homologous gene; regulator.
  
    0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.