STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3186RNA-binding protein (fragment); Function of strongly homologous gene; factor. (36 aa)    
Predicted Functional Partners:
nuoCD
NADH-quinone oxidoreductase, subunits C and D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
    
   0.862
NIDE0325
Putative RNA-metabolising metallo-beta-lactamase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.807
rhlE-2
ATP-dependent RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.783
NIDE3185
Protein of unknown function; No homology to any previously reported sequences.
       0.773
NIDE0009
Conserved protein of unknown function, NmrA-like; Homologs of previously reported genes of unknown function; 12764138.
    
   0.571
NIDE3598
Putative Oxidoreductase, NmrA-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.571
NIDE3183
Putative FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.566
nuoE
NADH-quinone oxidoreductase, subunit E; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
   0.540
fdsG
Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme.
   
   0.540
hrpB
ATP-dependent helicase HrpB; Function of strongly homologous gene; enzyme.
    
 0.499
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.