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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3200Putative Ribonuclease Z; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (339 aa)    
Predicted Functional Partners:
NIDE2630
Protein of unknown function, putative Protease with integrin domain; No homology to any previously reported sequences; 11517925, 7845208, 8439290.
   
   0.822
NIDE3201
Homologs of previously reported genes of unknown function.
       0.766
NIDE3202
Protein of unknown function; No homology to any previously reported sequences.
       0.746
NIDE3198
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.594
NIDE2518
Homologs of previously reported genes of unknown function.
  
     0.591
NIDE3199
Homologs of previously reported genes of unknown function.
       0.538
NIDE3203
Protein of unknown function; No homology to any previously reported sequences.
       0.517
NIDE1150
Uncharacterized protein; Homologs of previously reported genes of unknown function; 14722619, 9478130; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.493
NIDE3197
Exported protein of unknown function; No homology to any previously reported sequences.
       0.403
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.