STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE3239Putative Multidrug resistance protein A (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (515 aa)    
Predicted Functional Partners:
NIDE3240
Putative Multidrug resistance outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   0.960
NIDE3241
Putative Multidrug resistance protein B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.
   0.954
NIDE3242
Putative Nitrite transporter NirC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.737
mdtA
Multidrug efflux system, subunit A; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.585
NIDE3324
Efflux transporter, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
   0.580
ttgC
RND efflux system, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
   0.507
oprM
RND efflux system, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
   0.500
NIDE1685
Putative Outer membrane protein TolC precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.494
NIDE2964
Multidrug efflux transporter, membrane fusion protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.492
NIDE3244
Putative Sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.479
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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