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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3246Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)    
Predicted Functional Partners:
NIDE3247
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
   0.969
NIDE3982
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
   0.863
NIDE0165
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.861
NIDE1164
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
   0.856
NIDE0935
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.849
NIDE1110
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.845
NIDE0586
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
   0.842
NIDE0580
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.841
NIDE1484
Putative Response regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
   0.841
NIDE2716
Putative Response regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
   0.841
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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