STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE3296Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304. (639 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd oxidase, subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.993
NIDE3303
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
 
  
 
0.924
NIDE0896
Uncharacterized protein; No homology to any previously reported sequences.
  
  
 
0.921
NIDE0901
Membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1; No homology to any previously reported sequences; 2843510.
  
  
 
0.910
cydA
Cytochrome bd oxidase, subunit I; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.
     
  0.900
NIDE3293
Putative Cytochrome c (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
     0.864
NIDE0562
Putative Universal stress protein UspA (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
   
 0.789
NIDE3308
Homologs of previously reported genes of unknown function.
 
     0.786
NIDE0903
Conserved protein of unknown function, putative Cytochrome c; Homologs of previously reported genes of unknown function; 3881803.
  
     0.775
NIDE3311
Homologs of previously reported genes of unknown function; 11278909.
 
     0.774
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.