STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbA-3ABC-type transport system, ATP-binding component; Function of strongly homologous gene; transporter. (255 aa)    
Predicted Functional Partners:
macC
ABC transporter, permease component, putative Macrolide export permease protein; Function of strongly homologous gene; transporter.
 
 
 0.958
NIDE3321
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.958
NIDE3944
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.958
NIDE3323
Putative Membrane-fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.893
NIDE3435
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
   
0.831
drrA
Daunorubicin resistance ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
   
0.821
NIDE3324
Efflux transporter, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
   
   0.794
NIDE3320
Protein of unknown function; No homology to any previously reported sequences.
       0.773
NIDE1279
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
 
   
0.754
NIDE2672
Putative Vitamin B12 import system, ATP-binding protein BtuD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
0.619
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.