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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolBProtein TolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter. (443 aa)    
Predicted Functional Partners:
tolQ
Protein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.977
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.972
pal
Peptidoglycan-associated lipoprotein Pal (modular protein); Function of strongly homologous gene; lipoprotein; Belongs to the Pal lipoprotein family.
 
 
 0.939
NIDE3361
Putative Protein TolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.913
NIDE3357
Putative Tol-Pal system protein YbgF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.903
NIDE3358
Putative Tol-Pal system protein YbgF (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.869
pal-2
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences; 11173492, 16475801, 17052729, 2202726; Belongs to the Pal lipoprotein family.
 
 
 0.858
NIDE2439
Putative Peptidoglycan-associated lipoprotein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
 
 
 0.855
NIDE1954
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences; 14763978, 1574003, 16475801, 2202726.
 
 
 0.841
NIDE0942
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences.
 
 
 0.808
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.