STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolBProtein TolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter. (443 aa)    
Predicted Functional Partners:
tolQ
Protein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.981
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.977
pal
Peptidoglycan-associated lipoprotein Pal (modular protein); Function of strongly homologous gene; lipoprotein; Belongs to the Pal lipoprotein family.
 
 
 0.922
NIDE3361
Putative Protein TolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.906
NIDE3357
Putative Tol-Pal system protein YbgF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.868
NIDE3358
Putative Tol-Pal system protein YbgF (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.832
pal-2
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences; 11173492, 16475801, 17052729, 2202726; Belongs to the Pal lipoprotein family.
 
 
 0.823
NIDE2439
Putative Peptidoglycan-associated lipoprotein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
 
 
 0.819
trpS
Tryptophanyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.815
ybgC
Acyl-CoA thioesterase; Function of strongly homologous gene; enzyme.
     
 0.806
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.