Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tolQProtein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter. (240 aa)    
Predicted Functional Partners:
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.996
tolB
Protein TolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.981
lptB
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter.
 
   
 0.930
pal
Peptidoglycan-associated lipoprotein Pal (modular protein); Function of strongly homologous gene; lipoprotein; Belongs to the Pal lipoprotein family.
 
   
 0.878
NIDE3361
Putative Protein TolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.875
exbD
Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.
 
 
 0.870
exbD-2
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.846
exbD3
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.838
ybgC
Acyl-CoA thioesterase; Function of strongly homologous gene; enzyme.
  
  
 0.810
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
   
 0.744
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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